IT-LIST Digest 4Topics covered in this issue include:  1) logic math ...	by Michael Shaffer   2) Importing Meridian Image Files	by Peter.Stalmans@med.kuleuven.ac.be (Peter Stalmans)  3) SDK and source code	by Peter.Stalmans@med.kuleuven.ac.be (Peter Stalmans)  4) Missing file when running IT 	by MVoue@gibbs.umh.ac.be  5) Re: SDK and source code	by pim van maurik   6) Re: Missing file when running IT	by "S. Brent Dove"   7) Re: SDK and source code	by "S. Brent Dove"   8) Re: SDK and source code	by Peter.Stalmans@med.kuleuven.ac.be (Peter Stalmans)  9) OOPS, Sorry	by Peter.Stalmans@med.kuleuven.ac.be (Peter Stalmans) 10) Re: logic math ...	by "S. Brent Dove"  11) Re: File Importing	by "S. Brent Dove"  12) Re: Importing Meridian Image Files	by Michael Shaffer  13) Windows 3.1	by John Zimmerman ----------------------------------------------------------------------Date: Fri, 12 Jan 1996 14:37:26 -0800From: Michael Shaffer To: IT-LIST@sparky.uthscsa.eduSubject: logic math ...Message-ID: <2.2.32.19960112223726.006ab048@darkwing.uoregon.edu>  I've just begun "tooling" around with ImageTool, and have noticed that Ican't find any capability to use logic (AND, OR, XOR, etc) operators on twoimages. Am I missing something?? Will this be added??  Looks good so far ...cheers, shaf<\/>/\<\/>/\<\/>/\<\/>  cognito, ergo zZOooOM  <\/>/\<\/>/\<\/>/\<\/>Michael Shaffer, R.A. - University of Oregon Electron Probe Facility     mshaf@oregon.uoregon.edu  -or-  mshaf@darkwing.uoregon.edu               http://darkwing.uoregon.edu/~mshaf/epmahome/------------------------------Date: Sat, 13 Jan 1996 13:29:39 +0100From: Peter.Stalmans@med.kuleuven.ac.be (Peter Stalmans)To: it-list@sparky.uthscsa.eduSubject: Importing Meridian Image FilesMessage-ID: <199601131229.AA26106@cc5.kuleuven.ac.be>In our lab, we're using two Meridian confocal microscopes that are used tostudy several (sub)cellular events in time. The machines generate a seriesof images for each experiment, and each image is a confocal image of thedesired area of cells at a certain time.For quick events (like calcium progressing through cells), we acquire imagesat up to 25 Hz, sometimes only 1 Hz or less is used.I would like to use ImageTool to analyze those images, but I have two problems:1) The files are saved on harddisk in a specific format. Although I have theexact information on how the image files are created, I do not know how todesign a tool that would allow ImageTool to import those images.2) Is it possible to write an add-in (or macro) to sequentially acquire theaverage pixel intensity in the same area(s) in each image file of oneexperiment?Thanks in advance,Peter StalmansPeter.Stalmans@med.kuleuven.ac.beLaboratory of Physiology KULeuvenHerestraat 493000 Leuventel: +32-16-34 71 46fax: +32-16-34 59 91------------------------------Date: Tue, 16 Jan 1996 09:00:53 +0100From: Peter.Stalmans@med.kuleuven.ac.be (Peter Stalmans)To: it-list@sparky.uthscsa.eduSubject: SDK and source codeMessage-ID: <199601160800.AA22479@cc5.kuleuven.ac.be>Which FTP site do I use to download the SDK and source code of ImageTool?Peter Stalmans, MDPeter.Stalmans@med.kuleuven.ac.beLaboratory of Physiology KULeuvenHerestraat 49B-3000 LeuvenBelgiumtel: +32-16-34 71 46fax: +32-16-34 59 91------------------------------Date: Tue, 16 Jan 96 09:54:07 +0100From: MVoue@gibbs.umh.ac.beTo: it-list@sparky.uthscsa.eduSubject: Missing file when running IT Message-ID: <9601160854.AA05680@gibbs.umh.ac.be>Dear IT users,We have installed IT under both Windows95 and Windows NT. When running the program (under each OS), a file (LEAD45.DLL) seems to be missing. Is it part of the IT package or from these operating systems ?Thanks for your comments ...Michel VoueCentre de Recherche en Modelisation Moleculaire (CRMM)Universite de Mons-Hainaut - B-7000 Mons (Belgium)e-mail : mvoue@gibbs.umh.ac.be------------------------------Date: Tue, 16 Jan 1996 15:13:48 +0100From: pim van maurik To: it-list@sparky.uthscsa.eduSubject: Re: SDK and source codeMessage-ID: <199601161413.AA26035@kali.cc.ruu.nl>At 01:59 16-01-96 +0600, you wrote:>Which FTP site do I use to download the SDK and source code of ImageTool?>>Peter Stalmans, MD>Peter.Stalmans@med.kuleuven.ac.be>Laboratory of Physiology KULeuven>Herestraat 49>B-3000 Leuven>Belgium>tel: +32-16-34 71 46>fax: +32-16-34 59 91>>> ook een goede middagvoor ftp:     MAXRAD6.UTHSCSA.EDUvoor www :    ddsdx.uthscsa.edugebruik wel versie 1.1 !!!!veel plezier er meepim van maurik------------------------------Date: Tue, 16 Jan 1996 08:47:12 -0500 (CDT)From: "S. Brent Dove" To: IT List Subject: Re: Missing file when running ITMessage-ID: <01I02LW84UK2009709@uthscsa.edu>Hello IT users,Sorry for the problems associated with the LEAD45.DLL.  It was left out of the DLL.ZIP file in the latest release version 1.1.1.Please download the LEAD45.ZIP file for the ftp server and unzip the file in the same directory that you unzipped the DLL.ZIP fileS. Brent Dove                            Voice: (210) 567-3333Diagnostic Sciences                      Fax:   (210) 567-3334University of Texas                      Email: dove@uthscsa.eduHealth Science Center                    Web:   ddxds.uthscsa.eduSan Antonio, TX    USA                   ftp:   maxrad6.uthscsa.edu------------------------------Date: Tue, 16 Jan 1996 09:03:07 -0500 (CDT)From: "S. Brent Dove" To: IT List Subject: Re: SDK and source codeMessage-ID: <01I02MGZ94AA00BVTX@uthscsa.edu>Hello IT users,The source code for the latest version 1.1.1 of UTHSCSA ImageTool is on the ftp serverthe ftp/pub/it/source subdirectory.You should be able to download it now atftp://maxrad6.uthscsa.eduS. Brent Dove                            Voice: (210) 567-3333Diagnostic Sciences                      Fax:   (210) 567-3334University of Texas                      Email: dove@uthscsa.eduHealth Science Center                    Web:   ddxds.uthscsa.eduSan Antonio, TX    USA                   ftp:   maxrad6.uthscsa.edu------------------------------Date: Tue, 16 Jan 1996 17:25:39 +0100From: Peter.Stalmans@med.kuleuven.ac.be (Peter Stalmans)To: it-list@sparky.uthscsa.eduSubject: Re: SDK and source codeMessage-ID: <199601161625.AA22427@cc5.kuleuven.ac.be>> ook een goede middag>>voor ftp:     MAXRAD6.UTHSCSA.EDU>>voor www :    ddsdx.uthscsa.edu>>gebruik wel versie 1.1 !!!!>>veel plezier er mee>>pim van maurik>Bedankt voor de tip!Ik heb echter reeds enkele keer geprobeerd de source code van volgende ftpsite te downloaden: maxrad6.uthscsa.edu/ftp/pub/it/source, maar ik kreegsteeds een lege directory als antwoord (op verschillende machines geprobeerd).Heeft U gelijkaardige problemen?Groeten,Peter StalmansPeter.Stalmans@med.kuleuven.ac.beLaboratory of Physiology KULeuvenHerestraat 49B-3000 LeuvenBelgiumtel: +32-16-34 71 46fax: +32-16-34 59 91------------------------------Date: Tue, 16 Jan 1996 17:28:09 +0100From: Peter.Stalmans@med.kuleuven.ac.be (Peter Stalmans)To: it-list@sparky.uthscsa.eduSubject: OOPS, SorryMessage-ID: <199601161628.AA31462@cc5.kuleuven.ac.be>The message below (in Dutch) was unintentionally sent to IT-List.With my apologiesPeter Stalmans>Bedankt voor de tip!>Ik heb echter reeds enkele keer geprobeerd de source code van volgende ftpsite te downloaden: maxrad6.uthscsa.edu/ftp/pub/it/source, maar ik kreegsteeds een lege directory als antwoord (op verschillende machines geprobeerd).Heeft U gelijkaardige problemen?>Groeten,>Peter Stalmans------------------------------Date: Tue, 16 Jan 1996 11:03:14 -0500 (CDT)From: "S. Brent Dove" To: IT List Subject: Re: logic math ...Message-ID: <01I02QNV5JJ60050SK@uthscsa.edu>Hello IT users,UTHSCSA ImageTool does not support logic operators at the present time.  There are plug-ins available to image addition and subtraction these are can be quantitative or qualitative.  It is possible to develop a plug-in which supports these logic operators.  You can down load the source code at ftp://maxrad6.uthscsa.eduIf we get enough people that need such a function we will try to develop it when time permits. S. Brent Dove                            Voice: (210) 567-3333Diagnostic Sciences                      Fax:   (210) 567-3334University of Texas                      Email: dove@uthscsa.eduHealth Science Center                    Web:   ddxds.uthscsa.eduSan Antonio, TX    USA                   ftp:   maxrad6.uthscsa.edu------------------------------Date: Tue, 16 Jan 1996 16:21:00 -0500 (CDT)From: "S. Brent Dove" To: IT List Subject: Re: File ImportingMessage-ID: <01I031QUBP760093VE@uthscsa.edu>Hello IT fans,We are presently expanding the capabilities of ImageTool to include grey scale images from 1 - 24 bits. At present IT support 8 bit grey scale images and 8 or 24 bit color images. This will provide access to all types of medical digital images such as CT, MRI, PET, Ultrasound, etc.  When we complete implementation of the architecture we will implement a new binary filter that will support 16 bit signed or unsigned, bytes swapped and calibrated images.  Remember to get the new upgrade to version 1.1 of ImageTool which is presently on the ftp server.  If any of you are having problems accessing the ftp server please let us know.Thanks for you support.S. Brent Dove                            Voice: (210) 567-3333Diagnostic Sciences                      Fax:   (210) 567-3334University of Texas                      Email: dove@uthscsa.eduHealth Science Center                    Web:   ddxds.uthscsa.eduSan Antonio, TX    USA                   ftp:   maxrad6.uthscsa.edu------------------------------Date: Wed, 17 Jan 1996 08:18:11 -0800From: Michael Shaffer To: it-list@sparky.uthscsa.eduSubject: Re: Importing Meridian Image FilesMessage-ID: <2.2.32.19960117161811.006ba564@darkwing.uoregon.edu>At 06:29 AM 1/13/96 +0600, you wrote:>In our lab, we're using two Meridian confocal microscopes that are used to>study several (sub)cellular events in time. The machines generate a series>of images for each experiment, and each image is a confocal image of the>desired area of cells at a certain time.>For quick events (like calcium progressing through cells), we acquire images>at up to 25 Hz, sometimes only 1 Hz or less is used.>I would like to use ImageTool to analyze those images, but I have two problems:>1) The files are saved on harddisk in a specific format. Although I have the>exact information on how the image files are created, I do not know how to>design a tool that would allow ImageTool to import those images.Peter,  If you know the dimensions of the image bitmap (e.g., 640 by 480) youshould be able to read it into Photoshop or NIH Image as a "raw" format.Photoshop would be better as it is likely to make an accurate "guess" at thesize of the image header. Once opened you should then be able to "save as" aTIFF format.  This capability for opening "raw" image formats should be on the ImageToolwish list. Hope this helps ...cheers, shaf<\/>/\<\/>/\<\/>/\<\/>  cognito, ergo zZOooOM  <\/>/\<\/>/\<\/>/\<\/>Michael Shaffer, R.A. - University of Oregon Electron Probe Facility     mshaf@oregon.uoregon.edu  -or-  mshaf@darkwing.uoregon.edu               http://darkwing.uoregon.edu/~mshaf/epmahome/------------------------------Date: Wed, 17 Jan 1996 12:16:48 +0000From: John Zimmerman To: IT-LIST@sparky.uthscsa.eduSubject: Windows 3.1Message-ID: <30FCE8B0.3FB6@columbia.edu>What happens if I try to load this software on Windows 3.1? My University won't let us install Win 95...doesn't work with our network applications.------------------------------End of IT-LIST Digest 4***********************